Programmable switching chips are becoming more commonplace, along with new packet
processing languages to configure the forwarding behavior. Our paper explores the design of …

In the past five years, the graduate networking course at Stanford has assigned over 200
students the task of reproducing results from over 40 networking papers. We began the project …

As datacenter speeds scale to 100 Gb/s and beyond, traditional congestion control algorithms
like TCP and RCP converge slowly to steady sending rates, which leads to poorer and …

A new empirical approach to model the solvent effects in protein−membrane complexes is
proposed. The generalized Born (GB) approximation is extended by including an implicit …

We describe a method for docking a ligand into a protein receptor while allowing flexibility
of the protein binding site. The method employs a multistep procedure that begins with the …

Human papillomaviruses (HPVs) infect epithelia and can lead to the development of lesions,
some of which have malignant potential. HPV type 16 (HPV16) is the most oncogenic …

We report a very fast and accurate physics‐based method to calculate pH‐dependent
electrostatic effects in protein molecules and to predict the pK values of individual sites of titration. …

We describe a new ab initio method and corresponding program, LOOPER, for the
prediction of protein loop conformations. The method is based on a multi-step algorithm (developed …

The basic differences between the 20 natural amino acid residues are due to differences in
their side‐chain structures. This characteristic design of protein building blocks implies that …

We describe the methodology and results from our validation study of the fully automated
antibody structure prediction tool available in the BIOVIA (formerly Accelrys) protein modeling …