User profiles for Travis Horst

Travis A. Ahn-Horst

Bioengineering, Stanford
Verified email at stanford.edu
Cited by 226

[HTML][HTML] Altered cell mechanics from the inside: dispersed single wall carbon nanotubes integrate with and restructure actin

BD Holt, H Shams, TA Horst, S Basu, AD Rape… - Journal of functional …, 2012 - mdpi.com
With a range of desirable mechanical and optical properties, single wall carbon nanotubes (SWCNTs)
are a promising material for nanobiotechnologies. SWCNTs also have potential …

Vented spikes improve delivery from intravenous bags with no air headspace

WJ Galush, TA Horst - Journal of Pharmaceutical Sciences, 2015 - Wiley Online Library
Flexible plastic bags are the container of choice for most intravenous (iv) infusions. Under
certain circumstances, however, the air–liquid interface present in these iv bags can lead to …

A spectral method for color quantitation of a protein drug solution

TE Swartz, J Yin, TW Patapoff, T Horst… - PDA Journal of …, 2016 - journal.pda.org
Color is an important quality attribute for biotherapeutics. In the biotechnology industry, a
visual method is most commonly utilized for color characterization of liquid drug protein …

[PDF][PDF] Identifying Transcription Unit Structure from Rend Sequencing Data

T Horst - cs229.stanford.edu
The goal of this project is to use sequencing data to identify transcription unit initiation and
termination sites within a genome to determine which genes are expressed together. …

Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation

DN Macklin, TA Ahn-Horst, H Choi, NA Ruggero… - Science, 2020 - science.org
INTRODUCTION The generation of biological data is presenting us with one of the most
demanding analysis challenges the world has ever faced, not only in terms of storage and …

[HTML][HTML] An expanded whole-cell model of E. coli links cellular physiology with mechanisms of growth rate control

TA Ahn-Horst, LS Mille, G Sun, JH Morrison… - NPJ Systems Biology …, 2022 - nature.com
Growth and environmental responses are essential for living organisms to survive and
adapt to constantly changing environments. In order to simulate new conditions and capture …

The E. coli whole-cell modeling project

G Sun, TA Ahn-Horst, MW Covert - EcoSal plus, 2021 - Am Soc Microbiol
The Escherichia coli whole-cell modeling project seeks to create the most detailed computational
model of an E. coli cell in order to better understand and predict the behavior of this …

[PDF][PDF] Cellular Processing of Single Wall Carbon Nanotubes

BD Holt - 2014 - kilthub.cmu.edu
Nanostructured materials are hailed to be the solutions of the future for many research areas,
and single wall carbon nanotubes (SWCNTs) are one of the more interesting materials due …

The EcoCyc Database (2023)

…, A Santos-Zavaleta, A Mackie, G Sun, TA Ahn-Horst… - EcoSal …, 2023 - Am Soc Microbiol
EcoCyc is a bioinformatics database available online at EcoCyc.org that describes the genome
and the biochemical machinery of Escherichia coli K-12 MG1655. The long-term goal of …

Cross-evaluation of E. coli's operon structures via a whole-cell model suggests alternative cellular benefits for low-versus high-expressing operons

G Sun, MM DeFelice, TE Gillies, TA Ahn-Horst… - Cell Systems, 2024 - cell.com
Many bacteria use operons to coregulate genes, but it remains unclear how operons benefit
bacteria. We integrated E. coli's 788 polycistronic operons and 1,231 transcription units into …