User profiles for Vahan Simonyan

Vahan Simonyan

Lead Scientist FDA
Verified email at fda.hhs.gov
Cited by 5022

CDD: a Conserved Domain Database for protein classification

…, BA Shoemaker, V Simonyan… - Nucleic acids …, 2005 - academic.oup.com
The Conserved Domain Database (CDD) is the protein classification component of NCBI's
Entrez query and retrieval system. CDD is linked to other Entrez databases such as Proteins, …

CDD: a curated Entrez database of conserved domain alignments

…, BS Rao, BA Shoemaker, V Simonyan… - Nucleic acids …, 2003 - academic.oup.com
The Conserved Domain Database (CDD) is now indexed as a separate database within the
Entrez system and linked to other Entrez databases such as MEDLINE®. This allows users …

[HTML][HTML] A new and updated resource for codon usage tables

…, LV Santana-Quintero, U Katneni, V Simonyan… - BMC …, 2017 - Springer
Background Due to the degeneracy of the genetic code, most amino acids can be encoded
by multiple synonymous codons. Synonymous codons naturally occur with different …

[HTML][HTML] Baseline human gut microbiota profile in healthy people and standard reporting template

…, H Morizono, JR Pisegna, S Rao, Y Ren, V Simonyan… - PloS one, 2019 - journals.plos.org
A comprehensive knowledge of the types and ratios of microbes that inhabit the healthy
human gut is necessary before any kind of pre-clinical or clinical study can be performed that …

[HTML][HTML] PubChem3D: a new resource for scientists

…, S Kim, L Han, S He, W Shi, V Simonyan… - Journal of …, 2011 - Springer
Background PubChem is an open repository for small molecules and their experimental
biological activity. PubChem integrates and provides search, retrieval, visualization, analysis, …

Molecular simulation of hydrogen adsorption in charged single-walled carbon nanotubes

VV Simonyan, P Diep, JK Johnson - The Journal of chemical physics, 1999 - pubs.aip.org
The adsorption of molecular hydrogen gas onto charged single-walled carbon nanotubes (SWNTs)
is studied by grand canonical Monte Carlo (GCMC) computer simulation. The …

[HTML][HTML] A second generation leishmanization vaccine with a markerless attenuated Leishmania major strain using CRISPR gene editing

…, N Ismail, A Siddiqui, V Simonyan… - Nature …, 2020 - nature.com
Leishmaniasis is a neglected tropical disease caused by Leishmania protozoa transmitted
by infected sand flies. Vaccination through leishmanization with live Leishmania major has …

MMDB: Entrez's 3D-structure database

…, BA Shoemaker, V Simonyan… - Nucleic Acids …, 2003 - academic.oup.com
Three-dimensional structures are now known within most protein families and it is likely, when
searching a sequence database, that one will identify a homolog of known structure. The …

Codon and codon-pair usage tables (CoCoPUTs): facilitating genetic variation analyses and recombinant gene design

…, N Hamasaki-Katagiri, E Osipova, V Simonyan… - Journal of molecular …, 2019 - Elsevier
Usage of sequential codon-pairs is non-random and unique to each species. Codon-pair
bias is related to but clearly distinct from individual codon usage bias. Codon-pair bias is …

Hydrogen storage in carbon nanotubes and graphitic nanofibers

VV Simonyan, JK Johnson - Journal of alloys and compounds, 2002 - Elsevier
We review experiments and computer simulations of adsorption of hydrogen on carbon
nanotubes and on graphitic nanofibers. New results for adsorption of hydrogen on bundles of …