Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues
Whole genome sequencing (WGS) of Mycobacterium tuberculosis has rapidly progressed
from a research tool to a clinical application for the diagnosis and management of …
from a research tool to a clinical application for the diagnosis and management of …
[PDF][PDF] The role of metadata in reproducible computational research
Reproducible computational research (RCR) is the keystone of the scientific method for in
silico analyses, packaging the transformation of raw data to published results. In addition to …
silico analyses, packaging the transformation of raw data to published results. In addition to …
PLANTdataHUB: a collaborative platform for continuous FAIR data sharing in plant research
HL Weil, K Schneider, M Tschöpe, J Bauer… - The Plant …, 2023 - Wiley Online Library
In modern reproducible, hypothesis‐driven plant research, scientists are increasingly relying
on research data management (RDM) services and infrastructures to streamline the …
on research data management (RDM) services and infrastructures to streamline the …
Towards the development of digital twins for the bio-manufacturing industry
CL Gargalo, SC de Las Heras, MN Jones… - Digital twins: Tools and …, 2021 - Springer
The bio-manufacturing industry, along with other process industries, now has the opportunity
to be engaged in the latest industrial revolution, also known as Industry 4.0. To successfully …
to be engaged in the latest industrial revolution, also known as Industry 4.0. To successfully …
Data lakes, clouds, and commons: A review of platforms for analyzing and sharing genomic data
RL Grossman - Trends in Genetics, 2019 - cell.com
Data commons collate data with cloud computing infrastructure and commonly used
software services, tools, and applications to create biomedical resources for the large-scale …
software services, tools, and applications to create biomedical resources for the large-scale …
OncoMX: a knowledgebase for exploring cancer biomarkers in the context of related cancer and healthy data
HM Dingerdissen, F Bastian… - JCO clinical cancer …, 2020 - ascopubs.org
PURPOSE The purpose of OncoMX knowledgebase development was to integrate cancer
biomarker and relevant data types into a meta-portal, enabling the research of cancer …
biomarker and relevant data types into a meta-portal, enabling the research of cancer …
[HTML][HTML] Data management and modeling in plant biology
M Krantz, D Zimmer, SO Adler, A Kitashova… - Frontiers in Plant …, 2021 - frontiersin.org
The study of plant-environment interactions is a multidisciplinary research field. With the
emergence of quantitative large-scale and high-throughput techniques, amount and …
emergence of quantitative large-scale and high-throughput techniques, amount and …
[HTML][HTML] Enabling precision medicine via standard communication of HTS provenance, analysis, and results
A personalized approach based on a patient's or pathogen's unique genomic sequence is
the foundation of precision medicine. Genomic findings must be robust and reproducible …
the foundation of precision medicine. Genomic findings must be robust and reproducible …
[HTML][HTML] Orchestrating and sharing large multimodal data for transparent and reproducible research
A Mammoliti, P Smirnov, M Nakano, Z Safikhani… - Nature …, 2021 - nature.com
Reproducibility is essential to open science, as there is limited relevance for findings that
can not be reproduced by independent research groups, regardless of its validity. It is …
can not be reproduced by independent research groups, regardless of its validity. It is …
Blockchain: An enabler for healthcare and life sciences transformation
F Curbera, DM Dias, V Simonyan… - IBM Journal of …, 2019 - ieeexplore.ieee.org
Major trends in healthcare and life sciences (HCLS) include huge amounts of and
longitudinal patient data, policies on a patient's rights to access and control their data, a …
longitudinal patient data, policies on a patient's rights to access and control their data, a …