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Research ArticleCONFERENCE PROCEEDING

A Practical Approach to a Viral Detection Pipeline Using Existing Viral and Non-Viral Sequence Resources

Kavitha Bekkari, Joseph Shpungin and John Ryan Thompson
PDA Journal of Pharmaceutical Science and Technology November 2014, 68 (6) 595-601; DOI: https://doi.org/10.5731/pdajpst.2014.01022
Kavitha Bekkari
1Genetics and Pharmacogenomics, Merck & Co., Inc., Kenilworth, NJ, USA;
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Joseph Shpungin
2High Performance Computing, Merck & Co., Inc., Rahway, NJ, USA; and
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John Ryan Thompson
3Genetically-Defined Diseases and Genomics, Bristol-Myers Squibb, Hopewell, NJ, USA
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  • For correspondence: john.thompson@bms.com
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References

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    1. Altschul S. F.,
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    Basic local alignment search tool. J. Mol. Biol. 1990, 215 (3), 403–410.
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    1. Kent W. J.
    BLAT—the BLAST-like alignment tool. Genome Research 2002, 12 (4), 656–664.
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    Mason – A Read Simulator for Second Generation Sequencing Data. Technical Report TR-B-10-06, 2010, Institut für Mathematik und Informatik, Freie Universität, Berlin.
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    1. Fonesca N. A.,
    2. Rung J.,
    3. Brazma A.,
    4. Marioni J. C.
    Tools for mapping high-throughput sequencing data. Bioinformatics 2012, 28 (24), 3169–3177.
    OpenUrlAbstract/FREE Full Text
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PDA Journal of Pharmaceutical Science and Technology: 68 (6)
PDA Journal of Pharmaceutical Science and Technology
Vol. 68, Issue 6
November/December 2014
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A Practical Approach to a Viral Detection Pipeline Using Existing Viral and Non-Viral Sequence Resources
Kavitha Bekkari, Joseph Shpungin, John Ryan Thompson
PDA Journal of Pharmaceutical Science and Technology Nov 2014, 68 (6) 595-601; DOI: 10.5731/pdajpst.2014.01022

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A Practical Approach to a Viral Detection Pipeline Using Existing Viral and Non-Viral Sequence Resources
Kavitha Bekkari, Joseph Shpungin, John Ryan Thompson
PDA Journal of Pharmaceutical Science and Technology Nov 2014, 68 (6) 595-601; DOI: 10.5731/pdajpst.2014.01022
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More in this TOC Section

CONFERENCE PROCEEDING

  • Proceedings of the 2017 Viral Clearance Symposium: Conclusion
  • Proceedings of the 2017 Viral Clearance Symposium, Session 1.2: Upstream Mitigation, Part 2—Virus Barrier Filter and HTST
  • Proceedings of the 2017 Viral Clearance Symposium, Session 3: Resin Lifetime
Show more CONFERENCE PROCEEDING

Development and Optimization of Data Analysis Pipelines

  • Cataloguing the Taxonomic Origins of Sequences from a Heterogeneous Sample Using Phylogenomics: Applications in Adventitious Agent Detection
Show more Development and Optimization of Data Analysis Pipelines

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Keywords

  • Adventitious virus detection
  • Virus contamination
  • Virus detection in samples
  • high throughput sequencing

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